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Appendices 1 and 2—References

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Isobe T., Uchida K., Taoka M., Shinkai F., Manabe T., and Okuyama T. 1991b. Automated high performance liquid chromatographic system for mapping proteins in highly complex mixtures. J. Chromatogr. 588: 115–123.

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Liapis A.I. and Grimes B.A. 2000. Modeling the velocity field of the electroosmotic flow in charged capillaries and in capillary columns packed with charged particles: Interstitial and intraparticle velocities in capillary electrochromatography systems. J. Chromatogr. 877: 181–215.

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Matyska M.T., Pesek J.J., Boysen R.I., and Hearn M.T.W. 2001. Characterization of open tubular capillary electrochromatography columns for the analysis of synthetic peptides using isocratic conditions. Anal. Chem. 73: 5116–5125.

Meyer H.E., Hoffmann-Posorske E., Korte H., and Heilmeyer L.M.G., Jr. 1986. Sequence analysis of phosphoserine-containing peptides. Modification for picomolar sensitivity. FEBS Lett. 204: 61–66.

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Parker M.H., Lunney E.A., Ortwine D.F., Pavlovsky A.G., Humblet C., and Brouillette C.G. 1999. Analysis of the binding of hydroxamic acid and carboxylic acid inhibitors to the stromelysin-1 (matrix metalloproteinase-3) catalytic domain by isothermal titration calorimetry. Biochemistry 38: 13592–13601.

Peterson G.L. 1983. Determination of total protein. Methods Enzymol. 91: 95–121.

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Radzicka A. and Wolfenden R. 1988. Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution. Biochemistry 27: 1664–1670.

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Richards F.M. 1977. Areas, volumes, packing and protein structure. Annu. Rev. Biophys. Bioeng. 6: 151–176.

Richardson W.S., Munksgaard E.C., and Butler W.T. 1978. Rat incisor phosphoprotein. The nature of the phosphate and quantitation of the phosphoserine. J. Biol. Chem. 253: 8042–8046.

Rose G.D., Geselowitz A.R., Lesser G.J., Lee R.H., and Zehfus M.H. 1985. Hydrophobicity of amino acids in globular proteins. Science 229: 834–838.

Ross G., Dittmann M., Bek F., and Rozing G. 1996. Capillary electrochromatography—Enhancement of LC separation in packed capillary columns by means of electrically driven mobile phases. Am. Lab. 28: 3–12.

Schien C.H. 1990. Solubility as a function of protein structure and solvent components. BioTechnology 8: 308–317.

Sedmak J.J. and Grossberg S.E. 1977. A rapid, sensitive and versatile assay for protein using Coomassie brilliant blue G250. Anal. Biochem. 79: 544–552.

Sigurskjold B.W. 2000. Exact analysis of competition ligand binding by displacement isothermal titration calorimetry. Anal. Biochem. 277: 260–266.

Smith P.K., Krohn R.I., Hermanson G.T., Mallia A.K., Gartner F.H., Provenzano M.D., Fujimoto E.K., Cocke N.M., Olson B.J., and Klenk D.C. 1985. Measurement of protein using bicinchoninic acid. Anal. Biochem. 150: 76–85.

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Straume M. and Freire E. 1992. Two-dimensional differential scanning calorimetry: Simultaneous resolution of intrinsic protein structural energetics and ligand binding interactions by global linkage analysis. Anal. Biochem. 203: 259–268.

Takahashi N., Isobe T., and Putnam F.W. 1991. Multidimensional, microscale HPLC technique in protein sequencing. In HPLC of proteins, peptides, and polynucleotides (ed. M.T.W. Hearn), pp. 307–330. VCH, New York.

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_______. 2000b. Thermodynamic dissection of the binding energetics of KNI-272, a potent HIV-1 protease inhibitor. Protein Sci. 9: 1801–1809.

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