.
. Protein–Protein Interactions: A Molecular Cloning Manual, Second EditionCSHL Press .
. . . . .
.
.
.
. .
 
.
. . .
.  FIRST VISIT?
 TRY THESE LINKS
.
. . .
.
.   Enroll for Updates
  Privacy Policy
  Purchase the book
.
.
 
 
.
. . .
.  BOOK COVER .
. . .
.
. Protein–Protein Interactions: A Molecular Cloning Manual, Second Edition cover .
.
CLICK TO ENLARGE
 
Buy the Book
 
   
 

Chapter 11: Bacterial Two-Hybrid System for Studying and Modifying Protein–Protein Interactions—References

Althoff E.A. and Cornish V.W. 2002. A bacterial small-molecule three-hybrid system. Angew. Chem. Int. Ed. Engl. 41: 2327–2330.

Ashkenazi A., Presta L. G., Marsters S.A., Camerato T.R., Rosenthal K.A., Fendly B.M., and Capon D.J. 1990. Mapping the CD4 binding site for human immunodeficiency virus by alanine-scanning mutagenesis. Proc. Natl. Acad. Sci. 87: 7150–7154.

Blaber M., Baase W.A., Gassner N., and Matthews B.W. 1995. Alanine scanning mutagenesis of the α-helix 115-123 of phage T4 lysozyme: Effects on structure, stability and the binding of solvent. J. Mol. Biol. 246: 317–330.

Blum J.H., Dove S.L., Hochschild A., and Mekalanos J.J. 2000. Isolation of peptide aptamers that inhibit intracellular processes. Proc. Natl. Acad. Sci. 97: 2241–2246.

Cunningham B.C. and Wells J.A. 1989. High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244: 1081–1085.

Dove S.L. and Hochschild A. 1998. Conversion of the ω subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target. Genes Dev. 12: 745–754.

Dove S.L. and Hochschild A. 2001. Bacterial two-hybrid analysis of interactions between region 4 of the σ70 subunit of RNA polymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa, J. Bacteriol. 183: 6413–6421.

Dove S.L. and Hochschild A. 2004. A bacterial two-hybrid system based on transcription activation. Methods Mol. Biol. 261: 231–246.

Dove S.L., Huang F.W., and Hochschild A. 2000. Mechanism for a transcriptional activator that works at the isomerization step. Proc. Natl. Acad. Sci. 97: 13215–13220.

Dove S.L., Joung J.K., and Hochschild A. 1997. Activation of prokaryotic transcription through arbitrary protein–protein contacts. Nature 386: 627–630.

Fields S. and Song O. 1989. A novel genetic system to detect protein-protein interactions. Nature 340: 245–246.

Dubini A. and Sargent F. 2003. Assembly of Tat-dependent [NiFe] hydrogenases: Identification of precursor-binding accessory proteins. FEBS Lett. 549: 141–146.

Gibbs C.S. and Zoller M.J. 1991. Identification of electrostatic interactions that determine the phosphorylation site specificity of the cAMP-dependent protein kinase. Biochemistry 30: 5329–5334.

Gimble F.S., Moure C.M., and Posey K.L. 2003. Assessing the plasticity of DNA target site recognition of the PI-SceI homing endonuclease using a bacterial two-hybrid selection system. J. Mol. Biol. 334: 993–1008.

Gregory B.D., Nickels B.E., Garrity S.J., Severinova E., Minakhin L., Urbauer R.J., Urbauer J.L., Heyduk T., Severinov K., and Hochschild A. 2004. A regulator that inhibits transcription by targeting an intersubunit interaction of the RNA polymerase holoenzyme. Proc. Natl. Acad. Sci. 101: 4554–4559.

Hu J.C., Kornacker M.G., and Hochschild A. 2000. Escherichia coli one- and two-hybrid systems for the analysis and identification of protein–protein interactions. Methods 20: 80–94.

Hurt J.A., Thibodeau S.A., Hirsh A.S., Pabo C.O., and Joung J.K. 2003. Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection, Proc. Natl. Acad. Sci. 100: 12271–12276.

Joung J.K. 2001. Identifying and modifying protein-DNA and protein–protein interactions using a bacterial two-hybrid selection system. J. Cell Biochem. Suppl. (suppl.) 37: 53–57.

Joung J.K., Ramm E.I., and Pabo C.O. 2000. A bacterial two-hybrid selection system for studying protein-DNA and protein–protein interactions. Proc. Natl. Acad. Sci. 97: 7382–7387.

Kuznedelov K., Minakhin L., Niedziela-Majka A., Dove S.L., Rogulja D., Nickels B.E., Hochschild A., Heyduk T., and Severinov K. 2002. A role for interaction of the RNA polymerase flap domain with the σ subunit in promoter recognition. Science 295: 855–857.

Malek J.A., Wierzbowski J.M., Tao W., Bosak S.A., Saranga D.J., Doucette-Stamm L., Smith D.R., McEwan P.J., and McKernan K. J. 2004. Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica. Nucleic Acids Res. 32: 1059–1064.

Miller J.H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.

Miller J.H. 1992. A short course in bacterial genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

Neylon C. 2004. Chemical and biochemical strategies for the randomization of protein encoding DNA sequences: Library construction methods for directed evolution. Nucleic Acids Res. 32: 1448–1459.

Nickels B.E., Roberts C.W., Sun H., Roberts J.W., and Hochschild A. 2002. The σ70 subunit of RNA polymerase is contacted by the λQ antiterminator during early elongation. Mol. Cell 10: 611–622.

Pande S., Makela A., Dove S. L., Nickels B.E., Hochschild A., and Hinton D.M. 2002. The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the sigma70 subunit of Escherichia coli RNA polymerase. J. Bacteriol. 184: 3957–3964.

Saito Y., Doi K., Yamagishi N., Ishihara K., and Hatayama T. 2004. Screening of Hsp105α-binding proteins using yeast and bacterial two-hybrid systems. Biochem. Biophys. Res. Commun. 314: 396–402.

Sambrook J. and Russell D.W. 2001, Molecular cloning: A laboratory manual, 3rd edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

Serebriiskii I.G. and Kotova E. 2004. Analysis of protein–protein interactions utilizing dual bait yeast two-hybrid system. Methods Mol. Biol. 261: 263–296.

Serebriiskii I.G., Toby G.G., Finley R.L., Jr., and Golemis E.A. 2001. Genomic analysis utilizing the yeast two-hybrid system. Methods Mol. Biol. 175: 415–454.

Shaywitz A.J., Dove S.L., Kornhauser J.M., Hochschild A., and Greenberg M.E. 2000. Magnitude of the CREB-dependent transcriptional response is determined by the strength of the interaction between the kinase-inducible domain of CREB and the KIX domain of CREB-binding protein. Mol. Cell. Biol. 20: 9409–9422.

Thibodeau S.A., Fang R., and Joung J.K. 2004. High-throughput beta-galactosidase assay for bacterial cell-based reporter systems. Biotechniques 36: 410–415.

Tottey S., Rondet S.A., Borrelly G.P., Robinson P.J., Rich P.R., and Robinson N.J. 2002. A copper metallochaperone for photosynthesis and respiration reveals metal-specific targets, interaction with an importer, and alternative sites for copper acquisition. J. Biol. Chem. 277: 5490–5497.

Whipple F.W. 1998. Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli. Nucleic Acids Res. 26: 3700–3706.

<<< Chapter 10 References            Chapter 12 References >>>

 
 
 

 
   
. .