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Chapter 15: Monitoring Protein–Protein Interactions by Time-resolved FTIR Difference Spectroscopy—References

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Allin C. and Gerwert K. 2001. Ras catalyzes GTP hydrolysis by shifting negative charges from gamma- to beta-phosphate as revealed by time-resolved FTIR difference spectroscopy. Biochemistry 40: 3037–3046.

Allin C., Ahmadian M.R., Wittinghofer A., and Gerwert K. 2001. Monitoring the GAP catalyzed H-Ras GTPase reaction at atomic resolution in real time. Proc. Natl. Acad. Sci. 98: 7754–7759.

Ataka K. and Heberle J. 2003. Electrochemically induced surface-enhanced infrared difference absorption (SEIDA) spectroscopy of a protein monolayer. J. Am. Chem. Soc. 125: 4986–4987.

Becker C.F.W., Hunter C.L., Seidel R., Kent S.B.H., Goody R.S., and Engelhard M. 2003. Total chemical synthesis of a functional interacting protein pair: The protooncogene H-Ras and the Ras-binding domain of its effector c-Raf1. Proc. Natl. Acad. Sci. 100: 5075–5080.

Bourne H.R. 1997. G proteins—The arginine finger strikes again. Nature 389: 673–674.

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Cepus V., Scheidig A.J., Goody R.S., and Gerwert K. 1998a. Time-resolved FTIR studies of the GTPase reaction of H-ras p21 reveal a key role for the β-phosphate. Biochemistry 37: 10263–10271.

Cepus V., Ulbrich C., Allin C., Troullier A. and Gerwert K. 1998b. Fourier transform infrared photolysis studies of caged compounds. Methods Enzymol. 291: 223–245.

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Kauffmann E., Darnton N. C., Austin R. H., Batt C., and Gerwert K. 2001. Lifetimes of intermediates in the β-sheet to α-helix transition of β-lactoglobulin by using a diffusional IR mixer. Proc. Natl. Acad. Sci. 98: 6646–6649.

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Palmer R.A., Manning C.J., Chao J.L., Noda I., Dowrey A.E., and Marcott C. 1991. Application of step-scan interferometry to two-dimensional Fourier transform infrared (2D FT-IR) correlation spectroscopy. Appl. Spectrosc. 45: 12–17.

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Pelliccioli A.P. and Wirz J. 2002. Photoremovable protecting groups: Reaction mechanisms and applications. Photochem. Photobiol. Sci. 1: 441–458.

Rammelsberg R., Hessling B., Chorongiewski H., and Gerwert K. 1997. Molecular reaction mechanisms of proteins monitored by nanosecond step-scan FT-IR difference spectroscopy. Appl. Spectrosc. 51: 558–562.

Rammelsberg R., Huhn G., Lubben M., and Gerwert K. 1998. Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network. Biochemistry 37: 5001–5009.

Remy A. and Gerwert K. 2003. Coupling of light-induced electron transfer to proton uptake in photosynthesis. Nat. Struct. Biol. 10: 637–644.

Rensland H., John J., Linke R., Simon I., Schlichting I., Wittinghofer A., and Goody R.S. 1995. Substrate and product structural requirements for binding of nucleotides to H-ras p21: The mechanism of discrimination between guanosine and adenosine nucleotides. Biochemistry 34: 593–599.

Rigler P., Ulrich W.-P., Hoffmann P., Mayer M., and Vogel H. 2003. Reversible immobilization of peptides: Surface modification and in situ detection by attenuated total reflection FTIR spectroscopy. ChemPhysChem 4: 268–275.

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Scheffzek K., Ahmadian M.R., Kabsch W., Wiesmuller L., Lautwein A., Schmitz F., and Wittinghofer A. 1997. The Ras-RasGAP complex: Structural basis for GTPase activation and its loss in oncogenic Ras mutants. Science 277: 333–338.

Souvignier G. and Gerwert K. 1992. Proton uptake mechanism of bacteriorhodopsin as determined by time-resolved stroboscopic-FTIR-spectroscopy. Biophys. J. 63: 1393–1405.

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Sudo Y., Furutani Y., Shimono K., Kamo N., and Kandori H. 2003. Hydrogen bonding alteration of Thr-204 in the complex between pharaonis phoborhodopsin and its transducer protein. Biochemistry 42: 14166–14172.

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Tatulian S.A., Chen B., Li J., Negash S., Middaugh C.R., Bigelow D.J., and Squier T.C. 2002. The inhibitory action of phospholamban involves stabilization of α-helices within the Ca-ATPase. Biochemistry 41: 741–751.

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Weidlich O. and Siebert F. 1993. Time-resolved step-scan FT-IR investigations of the transition from KL to L in the bacteriorhodopsin photocycle: Identification of chromophore twists by assigning hydrogen-out-of-plane (HOOP) bending vibrations. Appl. Spectrosc. 47: 1394–1400.

Wittinghofer A. and Pai E.F. 1991. The structure of Ras protein: A model for a universal molecular switch. Trends Biochem. Sci. 16: 382–387.

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