.
. Protein–Protein Interactions: A Molecular Cloning Manual, Second EditionCSHL Press .
. . . . .
.
.
.
. .
 
.
. . .
.  FIRST VISIT?
 TRY THESE LINKS
.
. . .
.
.   Enroll for Updates
  Privacy Policy
  Purchase the book
.
.
 
 
.
. . .
.  BOOK COVER .
. . .
.
. Protein–Protein Interactions: A Molecular Cloning Manual, Second Edition cover .
.
CLICK TO ENLARGE
 
Buy the Book
 
   
 

Chapter 23: Evanescent Field Fluorescence Microscopy for Analysis of Protein–DNA Interactions at the Single-Molecule Level—References

Adams C.C. and Workman J.L. 1995. Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative. Mol. Cell Biol. 15: 1405–1421.

An W., Leuba S.H., van Holde K., and Zlatanova J. 1998. Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner. Proc. Natl. Acad. Sci. 95: 3396–3401.

Axelrod D. 1989. Total internal reflection fluorescence microscopy. Methods Cell. Biol. 30: 245–270.

Axelrod D. 2003. Total internal reflection fluorescence microscopy in cell biology. Methods Enzymol. 361: 1–33.

Chew H., Wang D., and Kerker M. 1979. Elastic scattering of evanescent electromagnetic waves. Appl. Opt. 18: 2679–2687.

Davey C.A., Sargent D.F., Luger K., Maeder A.W., and Richmond T.J. 2002. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. J. Mol. Biol. 319: 1097–1113.

Davidson M.W. and Abramowitz M. 2003. Optical microscopy. Olympus America, New York.

DeLano W.L. 2002. The PyMOL molecular graphics system. DeLano Scientific, San Carlos, California.

Ha T. 2001. Single-molecule fluorescence resonance energy transfer. Methods 25: 78–86.

Harada Y., Sakurada K., Aoki T., Thomas D.D., and Yanagida T. 1990. Mechanochemical coupling in actomyosin energy transduction studied by in vitro movement assay. J. Mol. Biol. 216: 49–68.

Harp J.M., Hanson B.L., Timm D.E., and Bunick G.J. 2000. Asymmetries in the nucleosome core particle at 2.5 Å resolution. Acta Crystallogr. Sect. D Biol. Crystallogr. 56: 1513–1534.

Hohng S., Wilson T.J., Tan E., Clegg R.M., Lilley D.M., and Ha T. 2004. Conformational flexibility of four-way junctions in RNA. J. Mol. Biol. 336: 69–79.

Luger K., Mäder A.W., Richmond R.K., Sargent D.F., and Richmond T.J. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389: 251–260.

McRee D.E. 1993. Practical protein crystallography. Academic Press, San Diego, California.

Michalet X., Kapanidis A.N., Laurence T., Pinaud F., Doose S., Pflughoefft M., and Weiss S. 2003. The power and prospects of fluorescence microscopies and spectroscopies. Annu. Rev. Biophys. Biomol. Struct. 32: 161–182.

Moerner W.E. and Fromm D.P. 2003. Methods of single-molecule fluorescence spectroscopy and microscopy. Rev. Sci. Instrum. 74: 3597–3619.

Rasnik I., Myong S., Cheng W., Lohman T.M., and Ha T. 2004. DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: Single-molecule studies of fluorescently labeled enzymes. J. Mol. Biol. 336: 395–408.

Selvin P.R. 2000. The renaissance of fluorescence resonance energy transfer. Nat. Struct. Biol. 7: 730–734.

Tan E., Wilson T.J., Nahas M.K., Clegg R.M., Lilley D.M., and Ha T. 2003. A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate. Proc. Natl. Acad. Sci. 100: 9308–9313.

Tomschik M., Karymov M.A., Zlatanova J., and Leuba S.H. 2001. The archaeal histone-fold protein HMf organizes DNA into bona fide chromatin fibers. Structure 9: 1201–1211.

von Holt C., Brandt W.F., Greyling H.J., Lindsey G.G., Retief J.D., Rodrigues J.D., Schwager S., and Sewell B.T. 1989. Isolation and characterization of histones. Methods Enzymol. 170: 431–523.

Zivanovic Y., Duband-Goulet I., Schultz P., Stofer E., Oudet P., and Prunell A. 1990. Chromatin reconstitution on small DNA rings. III. Histone H5 dependence of DNA supercoiling in the nucleosome. J. Mol. Biol. 214: 479–495.

<<< Chapter 22 References            Chapter 24 References >>>

 
 
 

 
   
. .