

	FIRST VISIT? TRY THESE LINKS


	Enroll for Updates Privacy Policy Purchase the book



	BOOK COVER




CLICK TO ENLARGE Buy the Book

Chapter 37: Genome-wide Analysis of Protein–Protein Interactions Using a Two-Hybrid Array—References

Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., and Sherlock G. 2000. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25–29.

Cagney G., Uetz P., and Fields S. 2000. High-throughput screening for protein–protein interactions using two-hybrid assay. Methods Enzymol. 328: 3–14.

Chien C.T., Bartel P.L., Sternglanz R., and Fields S. 1991. The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. 88: 9578–9582.

Cliften P., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., and Johnston M. 2003. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301: 71–76.

Estojak J., Brent R., and Golemis E.A. 1995. Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 15: 5820–5829.

Finley R.L., Jr., and Brent R. 1994. Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators. Proc. Natl. Acad. Sci. 91: 12980–12984.

Gera J.F., Hazbun T.R., and Fields S. 2002. Array-based methods for identifying protein–protein and protein–nucleic acid interactions. Methods Enzymol. 350: 499–512.

Gietz R.D. and Woods R.A. 2002. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol. 350: 87–96.

Giot L., Bader J.S., Brouwer C., Chaudhuri A., Kuang B., Li Y., Hao Y.L., Ooi C.E., Godwin B., Vitols E., et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302: 1727–1736.

Han J.D., Bertin N., Hao T., Goldberg D.S., Berriz G.F., Zhang L.V., Dupuy D., Walhout A. J., Cusick M.E., Roth F.P., and Vidal M. 2004. Evidence for dynamically organized modularity in the yeast protein–protein interaction network. Nature 430: 88–93.

Hazbun T.R. and Fields S. 2001. Networking proteins in yeast. Proc. Natl. Acad. Sci. 98: 4277–4278.

Hazbun T.R., Malmstrom L., Anderson S., Graczyk B.J., Fox B., Riffle M., Sundin B.A., Aranda J.D., McDonald W.H., Chiu C.H., et al. 2003. Assigning function to yeast proteins by integration of technologies. Mol. Cell 12: 1353–1365.

Ito T., Chiba T., Ozawa R., Yoshida M., Hattori M., and Sakaki Y. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. 98: 4569–4574.

James P., Halladay J., and Craig E.A. 1996. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425–1436.

Kellis M., Patterson N., Endrizzi M., Birren B., and Lander E. S. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241–254.

Li S., Armstrong C.M., Bertin N., Ge H., Milstein S., Boxem M., Vidalain P.O., Han J.D., Chesneau A., Hao T., et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303: 540–543.

Oldenburg K.R., Vo K.T., Michaelis S., and Paddon C. 1997. Recombination-mediated PCR-directed plasmid construction in vivo in yeast. Nucleic Acids Res. 25: 451–452.

Shang C., Hazbun T.R., Cheeseman I.M., Aranda J., Fields S., Drubin D.G., and Barnes G. 2003. Kinetochore protein interactions and their regulation by the Aurora kinase Ipl1p. Mol. Biol. Cell 14: 3342–3355.

Uetz P., Giot L., Cagney G., Mansfield T.A., Judson R.S., Knight J.R., Lockshon D., Narayan V., Srinivasan M., Pochart P., et al. 2000. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae. Nature 403: 623–627.

von Mering C., Krause R., Snel B., Cornell M., Oliver S.G., Fields S., and Bork P. 2002. Comparative assessment of large-scale data sets of protein–protein interactions. Nature 417: 399–403.

Winzeler E.A., Shoemaker D.D., Astromoff A., Liang H., Anderson K., Andre B., Bangham R., Benito R., Boeke J.D., Bussey H., et al. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901–906.

Yook S.H., Oltvai Z.N., and Barabasi A.L. 2004. Functional and topological characterization of protein interaction networks. Proteomics 4: 928–942.

Yu H., Greenbaum D., Xin Lu H., Zhu X., and Gerstein M. 2004. Genomic analysis of essentiality within protein networks. Trends Genet. 20: 227–231.

Zhong J., Zhang H., Stanyon C.A., Tromp G., and Finley R.L., Jr. 2003. A strategy for constructing large protein interaction maps using the yeast two-hybrid system: Regulated expression arrays and two-phase mating. Genome Res. 13: 2691–2699.

<<< Chapter 36 References Chapter 38 References >>>

The reproduction, modification, storage in a retrieval system, or retransmission, in any form or by any means, electronic, mechanical, or otherwise, for reasons other than personal, noncommercial use is strictly prohibited without prior written permission. You are authorized to download one copy of the material on this Web site for personal, noncommercial use only. The material made available on this Web site is protected by United States copyright laws and is provided solely for the use of instructors in teaching their courses and assessing student learning. Dissemination or sale of any of this material, as a whole or in parts (including on the World Wide Web), is not permitted. All users of these materials and visitors to this Web site are expected to abide by these restrictions. Requests for permission for other uses of this material should be directed to Cold Spring Harbor Laboratory Press, 1 Bungtown Road, Cold Spring Harbor, NY 11724 or submitted via our World Wide Web Site at http://www.cshlpress.com/.