Chapter 32: Imaging Protein Interactions by FRET Microscopy—References

Adams S.R., Harootunian A.T., Buechler Y.J., Taylor S.S., and Tsien R.Y. 1991. Fluorescence ratio imaging of cyclic AMP in single cells. Nature 349: 694–697.

Baird G.S., Zacharias D.A., and Tsien R.Y. 2000. Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc. Natl. Acad. Sci. 97: 11984–11989.

Bastiaens P.I.H. and Jovin T.M. 1996. Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: Fluorescent-labeled protein kinase C βI. Proc. Natl. Acad. Sci. 93: 8407–8412.

Bastiaens P.I.H. and Jovin T.M. 1998. Fluorescence resonance energy transfer microscopy. In Cell biology: A laboratory handbook (ed. J.E. Celis), vol. 3, pp. 136–146. Academic Press, New York.

Bastiaens P.I.H. and Squire A. 1999. Fluorescence lifetime imaging microscopy: Spatial resolution of biochemical processes in the cell. Trends Cell Biol. 9: 48–52.

Bastiaens P.I.H., Majoul I.V., Verveer P.J., Söling H.-D., and Jovin T.M. 1996. Imaging the intracellular trafficking and state of the AB₅ quaternary structure of cholera toxin. EMBO J. 15: 4246–4253.

Campbell R.E., Tour O., Palmer A.E., Steinbach P.A., Baird G., Zacharias D.A., and Tsien R. Y. 2002. A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. 99: 7877–7882.

Chiu V.K., Bivona T., Hach A., Sajous J.B., Silletti J., Wiener H., Johnson R.L., II, Cox A.D., and Philips M.R. 2002. Ras signalling on the endoplasmic reticulum and the Golgi. Nat. Cell Biol. 4: 343–350.

Clayton A.H.A., Hanley Q.S., and Verveer P.J. 2004. Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data. J. Microsc. 213: 1–5.

Clegg R.M. 1996. Fluorescence resonance energy transfer. In Fluorescence imaging spectroscopy and microscopy (ed. X.F. Wang and B. Herman), pp. 179–252. Wiley, New York.

Clegg R.M., Feddersen B.A., Gratton E., and Jovin T.M. 1992. Time resolved imaging fluorescence microscopy. Proc. SPIE 1640: 448–460.

Förster T. 1948. Zwischenmolekulare Energiewanderung und Fluoreszenz. Ann. Phys. 2: 57–75.

Gadella T.W.J., Jr., Clegg R.M., and Jovin T.M. 1994. Fluorescence lifetime imaging microscopy: Pixel-by-pixel analysis of phase-modulation data. Bioimaging 2: 139–159.

Gadella T.W.J., Jr., Jovin T.M., and Clegg R.M. 1993. Fluorescence lifetime imaging microscopy (FLIM): Spatial resolution of micro-structures on the nanosecond time-scale. Biophys. Chem. 48: 221–239.

Gordon G.W., Berry G., Liang X.H., Levine B., and Herman B. 1998. Quantitative fluorescence energy transfer measurements using fluorescence microscopy. Biophys. J. 74: 2702–2713.

Griffin A.B., Adams S.R., and Tsien R.Y. 1998. Specific covalent labeling of recombinant protein molecules inside live cells. Science 281: 269–272.

Gurskaya N.G., Fradkov A.F., Terskikh A., Matz M.V., Labas Y.A., Martynov I., Yanushevich Y.G., Lukyanov K.A., and Lukyanov S.A. 2001. GFP-like chromoproteins as a source of far-red fluorescent proteins. FEBS Lett. 507: 16–20.

Hancock J.F. 2003. Ras proteins: Different signals from different locations. Nat. Rev. Mol. Cell Biol. 4: 373–384.

Harpur A.G., Wouters F.S., and Bastiaens P.I.H. 2001. Imaging FRET between spectrally similar GFP molecules in single cells. Nat. Biotechnol. 19: 167–169.

Heim R., Prasher D.C., and Tsien R.Y. 1994. Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc. Natl. Acad. Sci. 91: 12501–12504.

Herman B. 1989. Resonance energy transfer microscopy. Methods Cell Biol. 30: 219–243.

Jovin T.M. and Arndt-Jovin D.J. 1989a. FRET microscopy: Digital imaging of fluorescence resonance energy transfer. In Cell structure and function by microspectrofluorometry (ed. E. Kohen and J.G. Hirschberg), pp. 99–115. Academic Press, San Diego, California.

Jovin T.M. and Arndt-Jovin D.J.. 1989b. Luminescence digital imaging microscopy. Annu. Rev. Biophys. Biophys. Chem. 18: 271–308.

Lakowicz J.R. and Berndt K. 1991. Lifetime-selective fluorescence imaging using an rf phase-sensitive camera. Rev. Sci. Instrum. 62: 1727–1734.

Llopis J., McCaffery J.M., Miyawaki A., Farquhar M.G., and Tsien R.Y. 1998. Measurement for cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins. Proc. Natl. Acad. Sci. 95: 6803–6808.

Mahajan N., Linder K., Berry G., Gordon G.W., Heim R., and Herman B. 1998. Bcl-2 and Bax interactions in mitochondria probed with green fluorescent protein and fluorescence resonance energy transfer. Nat. Biotechnol. 16: 547–552.

Matz M.V., Lukyanov K.A., and Lukyanov S.A. 2002. Family of the green fluorescent protein: Journey to the end of the rainbow. Bioessays 24: 953–959.

Matz M.V., Fradkov A.F., Labas Y.A., Savitsky A.P., Zaraisky A.G., Markelov M.L., and Lukyanov S.A. 1999. Fluorescent proteins from nonbioluminescent Anthozoa species. Nat. Biotechnol. 17: 969–973.

Miyawaki A. 2002. Green fluorescent protein-like proteins in reef Anthozoa animals. Cell Struct. Funct. 27: 343–347.

Miyawaki A. 2003. Visulization of the spatial and temporal dynamics of intracellular signaling. Dev. Cell 4: 295–305.

Miyawaki A., Griesbeck O., Heim R., and Tsien R.Y. 1999. Dynamic and quantitative Ca²⁺ measurements using improved cameleons. Proc. Natl. Acad. Sci. 96: 2135–2140.

Miyawaki A., Llopis J., Heim R., McCaffery J.M., Adams J.A., Ikura M., and Tsien R.Y. 1997. Fluorescent indicators for Ca²⁺ based on green fluorescent proteins and calmodulin. Nature 388: 882–887.

Nagai T., Ibata K., Park E.S., Kubota M., Mikoshiba K., and Miyawaki A. 2002. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat. Biotechnol. 20: 87–90.

Nagy P., Vámosi G., Bodnár A., Locket S.J. and Szöllösi J. 1998. Intensity-based energy transfer measurements in digital imaging microscopy. Eur. Biophys. J. 27: 377–389.

Ng T., Squire A., Hansra G., Bornancin F., Prevostel C., Hanby A., Harris W., Barnes D., Schmidt S., Mellor H., et al. 1999. Imaging protein kinase Cα activation in cells. Science 283: 2085–2089.

Ormö M., Cubitt A. B., Kallio K., Gross L., Tsien R.Y., and Remington S. J. 1996. Crystal structure of Aequorea victoria green fluorescent protein. Science 273: 1392–1395.

Patterson G.H., Piston D.W., and Barisas B.G. 2000. Förster distances between green fluorescent protein pairs. Anal. Biochem. 284: 438–440.

Peyker A., Rocks O., and Bastiaens P.I.H. 2005. Imaging activation of two Ras isoforms simultaneously in a single cell. Chembiochem. 6: 78–85.

Pollock B.A. and Heim R. 1999. Using GFP in FRET-based applications. Trends Cell Biol. 9: 57–60.

Prasher D.C., Eckenrode V.K., Ward W.W., and Prendergast F.G. 1992. Primary structure of Aequorea victoria green-fluorescent protein. Gene 111: 229–233.

Press W.H., Teukolsky S.A., Vetterling W.T., and Flannery B.P. 1992. Numerical recipes in C. Cambridge University Press, United Kingdom.

Sambrook J. and Russell D. 2001. Molecular cloning: A laboratory manual, 3rd edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

Schönle A., Glatz M., and Hell S.W. 2000. Four-dimensional multiphoton microscopy with time-correlated single-photon counting. Appl. Optics 39: 6306–6311.

Squire A., Verveer P.J., and Bastiaens P.I.H. 2000. Multiple frequency fluorescence lifetime imaging microscopy. J. Microsc. 197: 136–149.

Sytsma J., Vroom J., de Grauw C.J., and Gerritsen H.C. 1998. Time-gated fluorescence lifetime imaging and microvolume spectroscopy using two-photon exciation. J. Microsc. 191: 39–51.

Tsien R.Y. 1998. The green fluorescent protein. Annu. Rev. Biochem. 67: 509–544.

van Munster E.B. and Gadella T.W., Jr. 2004. Suppression of photobleaching-induced artifacts in frequency-domain FLIM by permutation of the recording order. Cytometry A 58: 185–194.

van Roessel P. and Brand A.H. 2002. Imaging into the future: Visualizing gene expression and protein interactions with fluorescent proteins. Nat. Cell Biol. 4: E15–E20.

Verveer P.J. and Bastiaens P.I.H. 2003. Evaluation of global analysis algorithms for single frequency fluorescence lifetime imaging microscopy data. J. Microsc. 209: 1–7.

Verveer P.J., Squire A., and Bastiaens P.I.H. 2001. Frequency-domain fluorescence lifetime imaging microscopy: A window on the biochemical landscape of the cell. In Methods in cellular imaging (ed. A. Periasamy), pp. 273–292. Oxford University Press, United Kingdom.

Verveer P.J., Wouters F.S., Reynolds A.R., and Bastiaens P.I.H. 2000. Quantitative imaging of lateral ErbB1 receptor signal propagation in the plasma membrane. Science 290: 1567–1570.

Wouters F.S. and Bastiaens P.I.H. 1999. Fluorescence lifetime imaging of receptor tyrosine kinase activity in cells. Curr. Biol. 9: 1127–1130.

Wouters F.S., Verveer P.J., and Bastiaens P.I.H. 2001. Imaging biochemistry inside cells. Trends Cell Biol. 11: 203–211.

Xu X., Gerard A.L., Huang B.C., Anderson D.C., Payan D.G., and Luo Y. 1998. Detection of programmed cell death using fluorescence energy transfer. Nucleic Acids Res. 26: 2034–2035.

Zhang J., Campbell R.E., Ting A.Y., and Tsien R.Y. 2002. Creating new fluorescent probes for cell biology. Nat. Rev. Mol. Cell Biol. 3: 906–918.

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